Variant report

Variant	rs2160413
Chromosome Location	chr2:171725418-171725419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10166493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10166671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10181139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4667663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433261	0.83[YRI][hapmap]
rs6433262	0.81[YRI][hapmap]
rs7558948	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7577421	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171699000-171730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:171710400-171725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:171717000-171729400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:171718200-171729400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:171718400-171729200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:171718600-171729400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:171718600-171729600	Weak transcription	Right Atrium	heart
8	chr2:171725200-171726000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:171725400-171725800	Enhancers	HMEC	breast
10	chr2:171725400-171726000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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