Variant report

Variant	rs2160778
Chromosome Location	chr2:40771562-40771563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10182412	1.00[ASN][1000 genomes]
rs10195113	1.00[ASN][1000 genomes]
rs10197644	1.00[ASN][1000 genomes]
rs10200082	1.00[ASN][1000 genomes]
rs10490259	1.00[ASN][1000 genomes]
rs12992455	1.00[ASN][1000 genomes]
rs13419033	1.00[ASN][1000 genomes]
rs72800319	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3460444	chr2:40764798-40772027	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3460445	chr2:40764798-40772027	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40757800-40774800	Weak transcription	Small Intestine	intestine
2	chr2:40767800-40774200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:40768800-40778800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:40770400-40772600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:40770600-40772000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:40770600-40772000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:40770600-40772600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:40771000-40771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:40771000-40773000	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:40771200-40771800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:40771200-40771800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:40771400-40771600	Flanking Active TSS	Fetal Heart	heart
13	chr2:40771400-40771800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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