Variant report
| Variant | rs2161355 |
|---|---|
| Chromosome Location | chr4:78130564-78130565 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118816 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs17002421 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17002448 | 1.00[EUR][1000 genomes] |
| rs17002449 | 1.00[EUR][1000 genomes] |
| rs17002454 | 1.00[EUR][1000 genomes] |
| rs17002456 | 1.00[EUR][1000 genomes] |
| rs2015393 | 1.00[EUR][1000 genomes] |
| rs28669186 | 1.00[EUR][1000 genomes] |
| rs56752313 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60329200 | 1.00[EUR][1000 genomes] |
| rs6532891 | 0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6811629 | 1.00[EUR][1000 genomes] |
| rs6812471 | 1.00[EUR][1000 genomes] |
| rs6817538 | 1.00[EUR][1000 genomes] |
| rs6820366 | 1.00[EUR][1000 genomes] |
| rs6829872 | 1.00[EUR][1000 genomes] |
| rs6840204 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6854976 | 1.00[EUR][1000 genomes] |
| rs72863245 | 1.00[EUR][1000 genomes] |
| rs72863263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72863275 | 1.00[EUR][1000 genomes] |
| rs72863276 | 1.00[EUR][1000 genomes] |
| rs72863279 | 1.00[EUR][1000 genomes] |
| rs72863282 | 1.00[EUR][1000 genomes] |
| rs72863284 | 1.00[EUR][1000 genomes] |
| rs72863287 | 1.00[EUR][1000 genomes] |
| rs7697954 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000730 | chr4:78109138-78210296 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011551 | chr4:78120872-78204224 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012298 | chr4:78120872-78255427 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv997743 | chr4:78126462-78217004 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:78125200-78143600 | Weak transcription | Primary B cells from cord blood | blood |
| 2 | chr4:78126200-78130600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
