Variant report

Variant	rs2161556
Chromosome Location	chr5:96477201-96477202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96270867..96272370-chr5:96475978..96478536,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247121	Chromatin interaction
ENSG00000113441	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs182624	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96455400-96491800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:96456400-96478000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:96459800-96491800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:96475000-96478200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:96475200-96480000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:96475400-96477600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:96475400-96478000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:96476000-96478000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:96476000-96478400	Active TSS	Brain Anterior Caudate	brain
10	chr5:96476000-96478600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:96476200-96478400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:96476200-96478600	Active TSS	Brain Cingulate Gyrus	brain
13	chr5:96476200-96478600	Active TSS	Brain Hippocampus Middle	brain
14	chr5:96476200-96478600	Active TSS	Brain Substantia Nigra	brain
15	chr5:96476200-96478600	Active TSS	Fetal Muscle Leg	muscle
16	chr5:96476200-96478800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:96476600-96477400	Enhancers	Fetal Kidney	kidney
18	chr5:96476600-96477800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:96476600-96478400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:96476600-96478400	Active TSS	Brain Germinal Matrix	brain
21	chr5:96476600-96478600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:96476800-96477800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:96476800-96478200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:96477000-96477400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr5:96477000-96477800	Weak transcription	Fetal Stomach	stomach
26	chr5:96477000-96478000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:96477000-96478200	Weak transcription	Fetal Brain Male	brain
28	chr5:96477000-96478200	Weak transcription	Fetal Brain Female	brain
29	chr5:96477200-96477400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:96477200-96477400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr5:96477200-96477400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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