Variant report

Variant	rs2161831
Chromosome Location	chr2:31235581-31235582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1862969	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744638	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31232600-31251000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:31234400-31236000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:31234400-31236000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:31234400-31236400	Enhancers	NHEK	skin
5	chr2:31234600-31235600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:31234600-31236000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:31234600-31236400	Enhancers	HMEC	breast
8	chr2:31234800-31236400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:31235200-31235600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:31235200-31235600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:31235200-31235600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:31235200-31236600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:31235200-31236800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr2:31235200-31251000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:31235400-31235600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:31235400-31235600	Enhancers	Fetal Lung	lung
17	chr2:31235400-31235600	Flanking Active TSS	GM12878-XiMat	blood
18	chr2:31235400-31236400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:31235400-31251000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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