Variant report

Variant	rs2162039
Chromosome Location	chr7:136815007-136815008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56219497	0.95[AFR][1000 genomes]
rs56694999	0.86[AFR][1000 genomes]
rs57395035	0.86[AFR][1000 genomes]
rs60108191	0.86[AFR][1000 genomes]
rs60474137	0.95[AFR][1000 genomes]
rs73727823	0.95[AFR][1000 genomes]
rs73727827	0.95[AFR][1000 genomes]
rs73727828	0.95[AFR][1000 genomes]
rs73727833	0.95[AFR][1000 genomes]
rs73727834	0.95[AFR][1000 genomes]
rs73727835	0.95[AFR][1000 genomes]
rs73727836	0.95[AFR][1000 genomes]
rs73727837	0.95[AFR][1000 genomes]
rs73727844	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2754488	chr7:136798166-136817637	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136812200-136815600	Weak transcription	NHLF	lung
2	chr7:136812600-136815600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:136813000-136815200	Weak transcription	Osteobl	bone
4	chr7:136814200-136815200	Weak transcription	NH-A	brain
5	chr7:136814400-136820200	Weak transcription	Fetal Heart	heart
6	chr7:136814800-136816000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:136815000-136815400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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