Variant report

Variant	rs2163066
Chromosome Location	chr16:72625623-72625624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72625289..72626865-chr16:72628654..72630919,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11859210	0.80[AFR][1000 genomes]
rs11861672	0.93[YRI][hapmap]
rs12103150	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13332257	0.92[AFR][1000 genomes]
rs13333424	0.88[AFR][1000 genomes]
rs13336634	0.97[AFR][1000 genomes]
rs13338662	0.96[AFR][1000 genomes]
rs13339625	0.92[AFR][1000 genomes]
rs1429069	0.88[AFR][1000 genomes]
rs1429070	0.87[AFR][1000 genomes]
rs1429433	0.85[YRI][hapmap]
rs16970897	0.85[AFR][1000 genomes]
rs16970929	0.88[AFR][1000 genomes]
rs16970987	0.84[AFR][1000 genomes]
rs16970996	0.92[AFR][1000 genomes]
rs16971006	0.91[AFR][1000 genomes]
rs16971145	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1864230	0.85[AFR][1000 genomes]
rs2017748	0.85[AFR][1000 genomes]
rs2053234	0.84[AFR][1000 genomes]
rs2107154	0.85[AFR][1000 genomes]
rs2189339	0.89[AFR][1000 genomes]
rs2336436	0.89[AFR][1000 genomes]
rs2840012	0.92[AFR][1000 genomes]
rs28459407	0.91[AFR][1000 genomes]
rs28464989	0.81[AFR][1000 genomes]
rs28514442	0.92[AFR][1000 genomes]
rs28568963	0.92[AFR][1000 genomes]
rs28569075	0.91[AFR][1000 genomes]
rs28616025	0.91[AFR][1000 genomes]
rs28634932	0.87[AFR][1000 genomes]
rs28828717	0.81[AFR][1000 genomes]
rs4255793	0.86[AFR][1000 genomes]
rs4624185	0.92[AFR][1000 genomes]
rs55777547	0.89[AFR][1000 genomes]
rs57841266	0.86[AFR][1000 genomes]
rs58363387	0.92[AFR][1000 genomes]
rs58819288	0.92[AFR][1000 genomes]
rs61192283	0.97[AFR][1000 genomes]
rs7184113	0.92[AFR][1000 genomes]
rs7185566	0.82[YRI][hapmap]
rs7187768	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs7192337	0.97[AFR][1000 genomes]
rs7199507	0.86[AFR][1000 genomes]
rs7199594	0.81[AFR][1000 genomes]
rs7203819	1.00[AFR][1000 genomes]
rs73583171	0.97[AFR][1000 genomes]
rs73583174	0.97[AFR][1000 genomes]
rs73583188	0.92[AFR][1000 genomes]
rs73584928	0.83[AFR][1000 genomes]
rs73584931	0.83[AFR][1000 genomes]
rs73599411	0.88[AFR][1000 genomes]
rs73601423	0.89[AFR][1000 genomes]
rs73601436	0.93[AFR][1000 genomes]
rs8043976	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs8045319	0.85[AFR][1000 genomes]
rs8045813	0.97[AFR][1000 genomes]
rs8046375	0.86[AFR][1000 genomes]
rs8050489	0.91[AFR][1000 genomes]
rs8051123	0.94[AFR][1000 genomes]
rs8051420	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs8051982	0.86[AFR][1000 genomes]
rs8053419	0.86[YRI][hapmap]
rs8053566	0.90[YRI][hapmap];1.00[AFR][1000 genomes]
rs8053837	0.99[AFR][1000 genomes]
rs8057796	0.92[AFR][1000 genomes]
rs8059369	0.92[AFR][1000 genomes]
rs8061838	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs9926706	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs9927677	0.84[AFR][1000 genomes]
rs9928673	0.91[AFR][1000 genomes]
rs9929006	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9932125	0.92[AFR][1000 genomes]
rs9933062	0.86[AFR][1000 genomes]
rs9934152	0.92[AFR][1000 genomes]
rs9935400	0.97[AFR][1000 genomes]
rs9935826	0.97[AFR][1000 genomes]
rs9937525	0.89[AFR][1000 genomes]
rs9938038	0.89[YRI][hapmap]
rs999210	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv523524	chr16:72464460-72635674	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1055142	chr16:72473520-72627783	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv542950	chr16:72473520-72627783	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv530712	chr16:72499171-72744114	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv1064928	chr16:72509626-72627783	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1065173	chr16:72509626-72693970	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv542951	chr16:72509626-72693970	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv518234	chr16:72544447-72635674	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1064027	chr16:72559417-72656702	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv1056987	chr16:72620573-72658730	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1064112	chr16:72620573-72671503	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72623000-72627200	Enhancers	Primary B cells from peripheral blood	blood
2	chr16:72623800-72627600	Weak transcription	NHDF-Ad	bronchial
3	chr16:72624400-72627400	Enhancers	Primary B cells from cord blood	blood
4	chr16:72624800-72626600	Weak transcription	Brain Germinal Matrix	brain
5	chr16:72625000-72629600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:72625200-72626400	Enhancers	GM12878-XiMat	blood
7	chr16:72625200-72629400	Weak transcription	HepG2	liver

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