Variant report
| Variant | rs2163091 |
|---|---|
| Chromosome Location | chr14:21010004-21010005 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198805 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs17111755 | 1.00[EUR][1000 genomes] |
| rs17111837 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs1760914 | 1.00[TSI][hapmap] |
| rs7141182 | 1.00[EUR][1000 genomes] |
| rs73587040 | 1.00[EUR][1000 genomes] |
| rs73587041 | 1.00[EUR][1000 genomes] |
| rs73587065 | 1.00[EUR][1000 genomes] |
| rs73587066 | 1.00[EUR][1000 genomes] |
| rs938885 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043923 | chr14:20338742-21336425 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 203 gene(s) | inside rSNPs | diseases |
| 2 | nsv541970 | chr14:20338742-21336425 | Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 203 gene(s) | inside rSNPs | diseases |
| 3 | esv21015 | chr14:20800765-21257878 | Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 173 gene(s) | inside rSNPs | diseases |
| 4 | nsv901468 | chr14:20997221-21149785 | Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
