Variant report

Variant	rs2164611
Chromosome Location	chr6:81168109-81168110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1370142	0.86[EUR][1000 genomes]
rs16891796	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55728334	0.86[AMR][1000 genomes]
rs62624463	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454170	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471478	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471480	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751632	0.86[EUR][1000 genomes]
rs7764790	1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs874435	1.00[EUR][1000 genomes]
rs9352831	0.86[EUR][1000 genomes]
rs9448962	0.86[EUR][1000 genomes]
rs9448968	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81162800-81168400	Enhancers	HMEC	breast
3	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
4	chr6:81163200-81168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
6	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:81166200-81168200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr6:81166200-81168400	Enhancers	NHEK	skin
9	chr6:81166200-81168400	Enhancers	NHLF	lung
10	chr6:81166400-81168200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:81166400-81168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:81166400-81168400	Enhancers	NHDF-Ad	bronchial
13	chr6:81166600-81168200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:81166600-81168400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:81166600-81168400	Enhancers	Fetal Stomach	stomach
16	chr6:81166800-81168200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:81166800-81168200	Enhancers	Colon Smooth Muscle	Colon
18	chr6:81166800-81168200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:81166800-81168200	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:81166800-81168200	Enhancers	HSMM	muscle
21	chr6:81166800-81168400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:81166800-81168400	Enhancers	Brain Anterior Caudate	brain
23	chr6:81166800-81168400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:81166800-81168400	Enhancers	NH-A	brain
25	chr6:81167000-81168200	Enhancers	Brain Germinal Matrix	brain
26	chr6:81167200-81168400	Enhancers	Fetal Lung	lung
27	chr6:81167600-81168400	Enhancers	HUVEC	blood vessel
28	chr6:81167600-81170200	Weak transcription	HSMMtube	muscle
29	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:81167600-81181400	Weak transcription	Ovary	ovary
31	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
32	chr6:81167800-81168200	Enhancers	Small Intestine	intestine
33	chr6:81167800-81168600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:81167800-81170000	Weak transcription	Hela-S3	cervix
35	chr6:81167800-81176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:81168000-81170000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:81168000-81170000	Weak transcription	Osteobl	bone

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