Variant report

Variant rs2165088
Chromosome Location chr1:161481036-161481037
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161476200-161482400 Weak transcription Colonic Mucosa Colon
2 chr1:161476600-161481600 Weak transcription Duodenum Mucosa Duodenum
3 chr1:161476800-161483400 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr1:161477000-161481600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:161477000-161482400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr1:161477000-161482400 Weak transcription Hela-S3 cervix
7 chr1:161477000-161482400 Weak transcription Osteobl bone
8 chr1:161477200-161482600 Weak transcription Adipose Nuclei Adipose
9 chr1:161477400-161482200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:161477400-161482400 Weak transcription HepG2 liver
11 chr1:161477400-161482600 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:161477400-161482600 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:161477400-161488200 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr1:161477600-161493600 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr1:161478200-161481400 Genic enhancers K562 blood
16 chr1:161479400-161482800 Genic enhancers Monocytes-CD14+_RO01746 blood
17 chr1:161479600-161481800 Genic enhancers Spleen Spleen
18 chr1:161479600-161483000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
19 chr1:161480200-161481400 Enhancers Fetal Lung lung
20 chr1:161480200-161481600 Enhancers Gastric stomach
21 chr1:161480200-161482800 Enhancers Fetal Muscle Trunk muscle
22 chr1:161480400-161481200 Enhancers Placenta Placenta
23 chr1:161480400-161481800 Enhancers Fetal Muscle Leg muscle
24 chr1:161480400-161481800 Enhancers Pancreas Pancrea
25 chr1:161480400-161483800 Enhancers Brain Cingulate Gyrus brain
26 chr1:161480600-161481600 Enhancers Brain Anterior Caudate brain
27 chr1:161480600-161481800 Enhancers Brain Substantia Nigra brain
28 chr1:161480600-161482600 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:161480800-161481200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:161480800-161482000 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
31 chr1:161480800-161482200 Weak transcription Primary B cells from cord blood blood
32 chr1:161480800-161482800 Genic enhancers Primary monocytes fromperipheralblood blood
33 chr1:161481000-161481200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:161481000-161481200 Enhancers Brain Inferior Temporal Lobe brain
35 chr1:161481000-161481200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
36 chr1:161481000-161481400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:161481000-161481400 Enhancers Fetal Stomach stomach
38 chr1:161481000-161481400 Weak transcription Lung lung
39 chr1:161481000-161483600 Enhancers Brain Hippocampus Middle brain

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