Variant report

Variant	rs2166306
Chromosome Location	chr1:67044436-67044437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10889633	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208934	0.80[EUR][1000 genomes]
rs1160675	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1445572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55778510	0.80[EUR][1000 genomes]
rs6681263	0.80[AMR][1000 genomes]
rs6696973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67984416	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524680	0.84[EUR][1000 genomes]
rs7537454	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs920987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs963141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9660797	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013351	chr1:67039730-67055937	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67040800-67044800	Enhancers	NHDF-Ad	bronchial
2	chr1:67041400-67045600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:67041600-67062400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:67042000-67045800	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:67042000-67046200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:67042000-67046400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:67042200-67045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:67042600-67044800	Enhancers	Osteobl	bone
9	chr1:67043000-67046600	Weak transcription	Small Intestine	intestine
10	chr1:67043200-67047600	Weak transcription	Fetal Lung	lung
11	chr1:67043200-67052000	Weak transcription	Brain Angular Gyrus	brain
12	chr1:67043200-67056800	Weak transcription	Brain Anterior Caudate	brain
13	chr1:67043200-67064400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:67043400-67045000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:67043400-67045000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:67043400-67056200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:67043600-67050600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:67043600-67066600	Weak transcription	Fetal Brain Male	brain
19	chr1:67044000-67057200	Weak transcription	Aorta	Aorta
20	chr1:67044200-67064000	Weak transcription	NH-A	brain
21	chr1:67044400-67044600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:67044400-67045000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:67044400-67045000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:67044400-67045800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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