Variant report

Variant	rs2168805
Chromosome Location	chr4:103411034-103411035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103409701..103414030-chr4:103420750..103423743,3	K562	blood:

Variant related genes	Relation type
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1005819	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1020759	0.93[CEU][hapmap]
rs1020760	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11722146	0.86[JPT][hapmap]
rs11723120	0.85[JPT][hapmap]
rs11733168	0.93[YRI][hapmap]
rs118882	0.95[JPT][hapmap]
rs12509517	0.86[JPT][hapmap]
rs1585213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1585215	0.95[JPT][hapmap]
rs1598859	0.86[JPT][hapmap]
rs1599961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17032705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs170731	0.95[JPT][hapmap]
rs1801	0.86[JPT][hapmap]
rs1882949	0.93[YRI][hapmap]
rs2085548	0.93[YRI][hapmap]
rs230491	0.95[JPT][hapmap]
rs230492	0.95[JPT][hapmap]
rs230493	0.95[JPT][hapmap]
rs230495	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230496	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230498	0.95[JPT][hapmap]
rs230500	0.95[JPT][hapmap]
rs230504	0.95[JPT][hapmap]
rs230505	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230509	0.95[JPT][hapmap]
rs230514	0.95[JPT][hapmap]
rs230515	0.95[JPT][hapmap]
rs230516	0.95[JPT][hapmap]
rs230519	0.95[JPT][hapmap]
rs230520	0.95[JPT][hapmap]
rs230521	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230525	0.95[JPT][hapmap]
rs230526	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230528	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230529	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs230531	0.95[JPT][hapmap]
rs230532	0.95[JPT][hapmap]
rs230533	0.95[JPT][hapmap]
rs230534	0.95[JPT][hapmap]
rs230535	0.95[JPT][hapmap]
rs230539	0.91[JPT][hapmap]
rs230540	0.86[JPT][hapmap]
rs230541	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs230542	0.86[JPT][hapmap]
rs3755867	0.86[JPT][hapmap]
rs3774933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3774936	0.95[JPT][hapmap]
rs3774937	0.95[JPT][hapmap]
rs3774938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3774956	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3774959	0.86[JPT][hapmap]
rs3774963	0.86[JPT][hapmap]
rs3774964	0.85[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs3817685	0.90[JPT][hapmap]
rs3821958	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4235404	0.95[JPT][hapmap]
rs4648011	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4648055	0.86[JPT][hapmap]
rs4648058	0.85[JPT][hapmap]
rs4648068	0.86[JPT][hapmap]
rs4698858	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs4699030	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs747559	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs9790601	0.86[JPT][hapmap]
rs980455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs9996514	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103399600-103416000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:103410200-103413800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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