Variant report

Variant	rs2170868
Chromosome Location	chr6:134223652-134223653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1120399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896010	1.00[ASN][1000 genomes]
rs56412384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56792618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925803	1.00[ASN][1000 genomes]
rs73548709	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548735	1.00[ASN][1000 genomes]
rs73548761	1.00[ASN][1000 genomes]
rs73774135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776706	1.00[EUR][1000 genomes]
rs9402547	0.82[YRI][hapmap]
rs9483624	1.00[EUR][1000 genomes]
rs9493754	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134221000-134227200	Weak transcription	Ovary	ovary
2	chr6:134222600-134223800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:134223600-134227600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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