Variant report

Variant	rs2173368
Chromosome Location	chr10:4692612-4692613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4691020..4693765-chr10:4695253..4697070,2	K562	blood:
2	chr10:4692495..4696289-chr10:4704356..4708036,4	MCF-7	breast:
3	chr10:4691378..4694078-chr10:4702195..4704638,2	MCF-7	breast:
4	chr10:4683804..4685343-chr10:4691589..4693258,2	MCF-7	breast:
5	chr10:4586883..4588795-chr10:4691830..4693502,2	MCF-7	breast:
6	chr10:3805083..3807904-chr10:4690931..4693769,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C2-4	chr10:4692378-4693395	XLOC_008703
2	lnc-AKR1C2-4	chr10:4692148-4693395	NONHSAT011101
3	lnc-AKR1C2-4	chr10:4692377-4693395	ENSG00000231298.2
4	lnc-AKR1C2-4	chr10:4692377-4693395	NONHSAT011106

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1025921	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10444199	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10508286	0.90[ASN][1000 genomes]
rs10795195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904312	0.88[ASN][1000 genomes]
rs10904313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904316	0.96[ASN][1000 genomes]
rs11252641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252646	0.87[ASN][1000 genomes]
rs11252648	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11252653	0.97[ASN][1000 genomes]
rs12780788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2165955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313453	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4680800-4692800	Weak transcription	Aorta	Aorta
4	chr10:4682800-4693800	Weak transcription	NHEK	skin
5	chr10:4682800-4694000	Weak transcription	HMEC	breast
6	chr10:4688800-4694800	Enhancers	Dnd41	blood
7	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:4690000-4697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:4691000-4693200	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:4691400-4692800	Weak transcription	Psoas Muscle	Psoas
11	chr10:4691600-4692800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:4691600-4694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:4691800-4693400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:4692000-4693000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4692000-4693000	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:4692000-4693200	Enhancers	Fetal Brain Male	brain
17	chr10:4692000-4693200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:4692200-4692800	Enhancers	Colon Smooth Muscle	Colon
19	chr10:4692200-4693000	Enhancers	Fetal Stomach	stomach
20	chr10:4692200-4693000	Enhancers	Stomach Mucosa	stomach
21	chr10:4692200-4693000	Flanking Active TSS	Osteobl	bone
22	chr10:4692200-4693200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:4692200-4693200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:4692200-4693200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:4692200-4693400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:4692200-4694800	Enhancers	NHDF-Ad	bronchial
27	chr10:4692200-4694800	Enhancers	NHLF	lung
28	chr10:4692400-4693000	Enhancers	A549	lung
29	chr10:4692400-4693200	Enhancers	Adipose Nuclei	Adipose
30	chr10:4692400-4693200	Enhancers	NH-A	brain
31	chr10:4692400-4694400	Genic enhancers	HUVEC	blood vessel
32	chr10:4692400-4694800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:4692600-4693000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:4692600-4693000	Enhancers	Fetal Kidney	kidney
35	chr10:4692600-4693000	Enhancers	Fetal Muscle Trunk	muscle
36	chr10:4692600-4693000	Enhancers	Right Atrium	heart
37	chr10:4692600-4693200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:4692600-4693200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:4692600-4693200	Enhancers	Fetal Muscle Leg	muscle
40	chr10:4692600-4693200	Enhancers	Left Ventricle	heart
41	chr10:4692600-4693200	Enhancers	Right Ventricle	heart
42	chr10:4692600-4693200	Enhancers	HSMM	muscle
43	chr10:4692600-4695600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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