Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10925818	1.00[ASN][1000 genomes]
rs12080823	0.97[ASN][1000 genomes]
rs1543015	1.00[ASN][1000 genomes]
rs1543016	1.00[ASN][1000 genomes]
rs1543017	1.00[ASN][1000 genomes]
rs1588359	1.00[ASN][1000 genomes]
rs1605885	1.00[ASN][1000 genomes]
rs2175168	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2353430	1.00[ASN][1000 genomes]
rs2353431	1.00[ASN][1000 genomes]
rs2353432	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35597969	1.00[ASN][1000 genomes]
rs6429125	1.00[ASN][1000 genomes]
rs6429126	1.00[ASN][1000 genomes]
rs6677311	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6682504	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7525377	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7540689	1.00[ASN][1000 genomes]
rs7552074	1.00[ASN][1000 genomes]
rs7554420	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873348	chr1:239023492-239356155	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv998542	chr1:239102274-239424608	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1002301	chr1:239182255-239774393	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1000227	chr1:239247968-239421826	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239257200-239263200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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