Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10269178	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10271713	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10807776	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1860581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs217542	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs217543	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs217583	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs217586	1.00[AFR][1000 genomes]
rs217587	1.00[AFR][1000 genomes]
rs217592	1.00[AFR][1000 genomes]
rs217596	1.00[AFR][1000 genomes]
rs217600	1.00[AFR][1000 genomes]
rs2191476	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4719428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4721378	0.89[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4721379	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4721381	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55766546	1.00[AFR][1000 genomes]
rs6461136	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6461138	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6461139	0.83[CEU][hapmap];1.00[AFR][1000 genomes]
rs7781882	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7792515	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs978175	1.00[AFR][1000 genomes]
rs980013	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14888400-14898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14897800-14898400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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