Variant report

Variant	rs2175517
Chromosome Location	chr3:68580426-68580427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1912458	0.88[ASN][1000 genomes]
rs6768223	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68579400-68580600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:68580200-68581600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:68580200-68582000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:68580400-68580600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:68580400-68581000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:68580400-68581400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:68580400-68581600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:68580400-68582000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:68580400-68585400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:68580400-68585600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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