Variant report

Variant	rs2176887
Chromosome Location	chr3:101105268-101105269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1464361	0.84[EUR][1000 genomes]
rs2449824	0.84[EUR][1000 genomes]
rs2460721	0.84[EUR][1000 genomes]
rs2553414	0.84[EUR][1000 genomes]
rs2553420	0.84[EUR][1000 genomes]
rs2553422	0.84[EUR][1000 genomes]
rs2553423	0.84[EUR][1000 genomes]
rs2553428	0.82[EUR][1000 genomes]
rs2682387	0.84[EUR][1000 genomes]
rs2682389	0.87[EUR][1000 genomes]
rs485037	0.84[EUR][1000 genomes]
rs485793	0.84[EUR][1000 genomes]
rs504482	0.82[EUR][1000 genomes]
rs513283	0.82[EUR][1000 genomes]
rs535779	0.82[EUR][1000 genomes]
rs551395	0.82[EUR][1000 genomes]
rs556820	0.82[EUR][1000 genomes]
rs565914	0.82[EUR][1000 genomes]
rs61379928	0.84[EUR][1000 genomes]
rs63482	0.82[EUR][1000 genomes]
rs72942230	0.84[EUR][1000 genomes]
rs72942264	0.84[EUR][1000 genomes]
rs7638284	0.84[EUR][1000 genomes]
rs7648141	0.82[EUR][1000 genomes]
rs9917699	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
2	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:101076200-101105600	Weak transcription	Esophagus	oesophagus
4	chr3:101084600-101106600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:101085000-101106600	Weak transcription	Fetal Brain Female	brain
6	chr3:101085600-101106800	Weak transcription	Dnd41	blood
7	chr3:101085600-101137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:101090600-101106600	Weak transcription	Fetal Lung	lung
9	chr3:101091000-101106800	Weak transcription	Fetal Thymus	thymus
10	chr3:101096800-101106400	Weak transcription	Aorta	Aorta
11	chr3:101096800-101106600	Weak transcription	Brain Substantia Nigra	brain
12	chr3:101096800-101111600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:101097600-101108000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:101099000-101108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:101099000-101110400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:101099000-101114600	Weak transcription	K562	blood
17	chr3:101099600-101105600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:101099600-101106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:101099600-101107000	Weak transcription	Primary B cells from cord blood	blood
20	chr3:101099600-101107000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:101099600-101107200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:101099600-101107800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:101100200-101106600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:101100800-101105400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:101100800-101105800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:101100800-101106400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:101100800-101108200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:101101200-101106600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:101101200-101108000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:101101600-101105600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:101101600-101106200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:101102000-101106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:101102000-101106800	Enhancers	Left Ventricle	heart
34	chr3:101102400-101105600	Weak transcription	Lung	lung
35	chr3:101102600-101105400	Weak transcription	Fetal Muscle Leg	muscle
36	chr3:101102600-101105400	Weak transcription	Placenta	Placenta
37	chr3:101102600-101105400	Weak transcription	Spleen	Spleen
38	chr3:101102600-101105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:101102600-101106800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:101102600-101107600	Strong transcription	Primary T cells from cord blood	blood
41	chr3:101103000-101105400	Weak transcription	Psoas Muscle	Psoas
42	chr3:101103200-101105800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:101103400-101106600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:101103600-101105400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr3:101103600-101105400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr3:101103600-101105600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:101103600-101105800	Weak transcription	Pancreas	Pancrea
48	chr3:101103600-101106400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:101103600-101106400	Weak transcription	Fetal Intestine Large	intestine
50	chr3:101103800-101105400	Weak transcription	Gastric	stomach

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