Variant report

Variant	rs2177648
Chromosome Location	chr6:71309107-71309108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71304523..71307209-chr6:71308818..71310942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271967	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2691507	1.00[AMR][1000 genomes]
rs2842078	0.94[AFR][1000 genomes]
rs9294877	1.00[AMR][1000 genomes]
rs9455175	1.00[AMR][1000 genomes]
rs9455183	1.00[AMR][1000 genomes]
rs9455184	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71277200-71310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:71286200-71310600	Weak transcription	Right Ventricle	heart
3	chr6:71288400-71309800	Weak transcription	Spleen	Spleen
4	chr6:71289800-71310200	Weak transcription	Colonic Mucosa	Colon
5	chr6:71291600-71310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:71292600-71310000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:71295400-71314000	Weak transcription	Aorta	Aorta
8	chr6:71296200-71310600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:71298000-71310800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:71300800-71310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:71301000-71309600	Weak transcription	Ovary	ovary
12	chr6:71301000-71310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:71301200-71309800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:71308800-71309200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:71308800-71309200	Enhancers	Dnd41	blood
16	chr6:71308800-71309400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:71308800-71309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:71308800-71309600	Enhancers	Primary T cells from cord blood	blood
19	chr6:71309000-71309200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:71309000-71309200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:71309000-71309200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:71309000-71309600	Enhancers	Primary T cells fromperipheralblood	blood

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