Variant report

Variant	rs2177942
Chromosome Location	chr5:116975696-116975697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55952605	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56328926	1.00[AMR][1000 genomes]
rs56350957	1.00[AMR][1000 genomes]
rs6890211	1.00[AMR][1000 genomes]
rs73784688	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786918	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786929	1.00[AMR][1000 genomes]
rs73786930	1.00[AMR][1000 genomes]
rs73786933	1.00[AMR][1000 genomes]
rs73786947	1.00[AMR][1000 genomes]
rs7722423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116975200-116976200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:116975600-116976800	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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