Variant report

Variant	rs2178028
Chromosome Location	chr7:80317474-80317475
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10224122	1.00[AMR][1000 genomes]
rs10268141	1.00[AMR][1000 genomes]
rs10268517	1.00[AMR][1000 genomes]
rs28450234	1.00[AMR][1000 genomes]
rs6467249	1.00[AMR][1000 genomes]
rs6467250	1.00[AMR][1000 genomes]
rs6948986	1.00[AMR][1000 genomes]
rs6949664	1.00[AMR][1000 genomes]
rs73371057	1.00[AMR][1000 genomes]
rs73373052	1.00[AMR][1000 genomes]
rs73373057	1.00[AMR][1000 genomes]
rs73373061	1.00[AMR][1000 genomes]
rs73373065	1.00[AMR][1000 genomes]
rs73373077	1.00[AMR][1000 genomes]
rs7777663	1.00[AMR][1000 genomes]
rs7778965	1.00[AMR][1000 genomes]
rs7789672	1.00[AMR][1000 genomes]
rs7792040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80316400-80317600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:80316400-80317800	Enhancers	Fetal Kidney	kidney
3	chr7:80316600-80317600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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