Variant report

Variant	rs2178698
Chromosome Location	chr7:70775307-70775308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11764267	1.00[YRI][hapmap]
rs1882574	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70773000-70775600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70773000-70775800	Weak transcription	Aorta	Aorta
5	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70773600-70775400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70773600-70776200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:70773600-70778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:70773600-70778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:70773600-70778400	Weak transcription	Fetal Lung	lung
12	chr7:70773800-70775400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:70773800-70776600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:70773800-70778200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:70773800-70778400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:70774000-70776800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:70774000-70779800	Weak transcription	Fetal Stomach	stomach
18	chr7:70774200-70775600	Weak transcription	Fetal Heart	heart
19	chr7:70774200-70776800	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:70774400-70775400	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:70774400-70775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:70774400-70775600	Weak transcription	Right Ventricle	heart
23	chr7:70774400-70775800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:70774400-70777000	Weak transcription	Ovary	ovary
25	chr7:70774400-70778400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:70774600-70775600	Weak transcription	Left Ventricle	heart
27	chr7:70775200-70775400	Active TSS	Brain Substantia Nigra	brain

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