Variant report

Variant	rs2178774
Chromosome Location	chr19:35776985-35776986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35775844..35777414-chr19:35778396..35780785,2	MCF-7	breast:
2	chr19:35775409..35778067-chr19:35786470..35789278,2	K562	blood:
3	chr19:35776981..35780325-chr19:35781978..35784871,3	MCF-7	breast:
4	chr19:35771828..35773656-chr19:35775065..35777175,3	K562	blood:
5	chr19:35757800..35759959-chr19:35775892..35777541,2	K562	blood:
6	chr19:35775470..35777616-chr19:35783839..35785786,2	K562	blood:

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000105697	Chromatin interaction
ENSG00000105695	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12742	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882694	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35762800-35780000	Weak transcription	Hela-S3	cervix
2	chr19:35768400-35781400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:35768800-35781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:35772000-35781200	Weak transcription	Brain Substantia Nigra	brain
5	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
6	chr19:35775400-35777200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr19:35775400-35782600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr19:35775600-35777200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:35776000-35781200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:35776200-35777000	Weak transcription	Ovary	ovary
11	chr19:35776200-35777000	Weak transcription	K562	blood
12	chr19:35776200-35780000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:35776200-35780000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr19:35776200-35781400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr19:35776200-35781400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:35776200-35781600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr19:35776200-35781600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:35776200-35784200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr19:35776200-35786400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr19:35776400-35778200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr19:35776400-35779200	Weak transcription	HepG2	liver
22	chr19:35776400-35780000	Weak transcription	Brain Angular Gyrus	brain
23	chr19:35776400-35780000	Weak transcription	Brain Hippocampus Middle	brain
24	chr19:35776400-35781200	Weak transcription	Brain Anterior Caudate	brain
25	chr19:35776400-35781400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr19:35776600-35778200	Weak transcription	Fetal Lung	lung

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