Variant report

Variant	rs2179424
Chromosome Location	chr1:172935443-172935444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10489273	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10912505	0.89[EUR][1000 genomes]
rs2143183	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172929800-172938200	Weak transcription	HSMMtube	muscle
2	chr1:172930000-172935800	Weak transcription	A549	lung
3	chr1:172930000-172936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172930000-172937200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:172930200-172935800	Weak transcription	NHLF	lung
6	chr1:172930800-172935800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:172933800-172936400	Weak transcription	NHDF-Ad	bronchial
8	chr1:172934000-172935800	Weak transcription	Stomach Mucosa	stomach
9	chr1:172935400-172937400	Enhancers	HUVEC	blood vessel
10	chr1:172935400-172938000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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