The 2.0 version of rSNPBase

Variant report

Variant rs2180542
Chromosome Location chr2:31492260-31492261
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:31458800-31493600 Weak transcription Primary T cells fromperipheralblood blood
2 chr2:31459400-31498600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr2:31462000-31495600 Weak transcription Fetal Lung lung
4 chr2:31463600-31501400 Weak transcription Pancreas Pancrea
5 chr2:31465400-31493600 Weak transcription HSMMtube muscle
6 chr2:31468000-31492600 Weak transcription Fetal Brain Male brain
7 chr2:31468200-31501600 Weak transcription Primary hematopoietic stem cells blood
8 chr2:31477000-31493400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr2:31479600-31493000 Weak transcription NHEK skin
10 chr2:31482000-31501000 Weak transcription Fetal Intestine Large intestine
11 chr2:31482600-31501400 Weak transcription Liver Liver
12 chr2:31485400-31495600 Weak transcription Fetal Muscle Trunk muscle
13 chr2:31486600-31510000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr2:31486800-31492600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr2:31487200-31493000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr2:31487200-31494000 Weak transcription Fetal Kidney kidney
17 chr2:31489600-31493600 Weak transcription Brain Inferior Temporal Lobe brain
18 chr2:31489600-31494800 Weak transcription Stomach Smooth Muscle stomach
19 chr2:31489600-31495200 Weak transcription Gastric stomach
20 chr2:31489800-31492400 Weak transcription Brain Anterior Caudate brain
21 chr2:31489800-31493400 Weak transcription Primary T cells from cord blood blood
22 chr2:31489800-31493400 Weak transcription Brain Cingulate Gyrus brain
23 chr2:31490000-31496800 Weak transcription Fetal Muscle Leg muscle
24 chr2:31490000-31502400 Weak transcription Spleen Spleen
25 chr2:31490200-31493000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:31490200-31495400 Weak transcription Fetal Intestine Small intestine
27 chr2:31490400-31497400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:31490600-31492600 Weak transcription Primary B cells from peripheral blood blood
29 chr2:31490600-31498600 Weak transcription Brain Germinal Matrix brain
30 chr2:31490800-31492400 Enhancers Right Ventricle heart
31 chr2:31490800-31494200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr2:31491000-31492400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr2:31491000-31492800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr2:31491000-31493600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr2:31491200-31494800 Weak transcription Fetal Stomach stomach
36 chr2:31491400-31492400 Enhancers Left Ventricle heart
37 chr2:31491400-31492600 Enhancers Esophagus oesophagus
38 chr2:31491400-31494400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr2:31491400-31498600 Enhancers Placenta Placenta
40 chr2:31491400-31499800 Weak transcription Fetal Brain Female brain
41 chr2:31491600-31493400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr2:31491600-31495000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
43 chr2:31491600-31495200 Enhancers HMEC breast
44 chr2:31491600-31495600 Enhancers Placenta Amnion Placenta Amnion
45 chr2:31491800-31492400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
46 chr2:31491800-31492400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr2:31491800-31492400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr2:31491800-31492400 Enhancers Lung lung
49 chr2:31491800-31492800 Enhancers Aorta Aorta
50 chr2:31491800-31493200 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015