Variant report

Variant	rs2181403
Chromosome Location	chr9:14242214-14242215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10122366	1.00[CHD][hapmap]
rs10124557	1.00[CHD][hapmap]
rs12351166	1.00[CHD][hapmap]
rs12351537	1.00[CHD][hapmap]
rs16931499	1.00[JPT][hapmap]
rs34252464	1.00[ASN][1000 genomes]
rs6474819	1.00[CHD][hapmap]
rs71511081	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14221200-14245600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14224400-14246800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:14236400-14245400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:14238400-14243000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:14238400-14246200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:14238800-14245600	Weak transcription	Placenta	Placenta
7	chr9:14238800-14246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:14238800-14246200	Weak transcription	Aorta	Aorta
9	chr9:14238800-14249800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:14238800-14250000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:14239000-14243400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:14239000-14245000	Weak transcription	HSMM	muscle
13	chr9:14239600-14244000	Enhancers	A549	lung
14	chr9:14239600-14246000	Enhancers	HUVEC	blood vessel
15	chr9:14239800-14245000	Weak transcription	Osteobl	bone
16	chr9:14239800-14251200	Weak transcription	Hela-S3	cervix
17	chr9:14240200-14242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:14240200-14243200	Enhancers	Brain Germinal Matrix	brain
19	chr9:14240600-14244800	Weak transcription	HMEC	breast
20	chr9:14240800-14243600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:14241000-14242600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:14241000-14242600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:14241000-14243600	Weak transcription	NHLF	lung
24	chr9:14241000-14243800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:14241000-14243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:14241000-14244400	Weak transcription	Stomach Mucosa	stomach
27	chr9:14241000-14244800	Weak transcription	Psoas Muscle	Psoas
28	chr9:14241000-14246400	Weak transcription	Spleen	Spleen
29	chr9:14241000-14249800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:14241000-14250000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:14241200-14242400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:14241200-14242400	Weak transcription	Small Intestine	intestine
33	chr9:14241200-14243400	Enhancers	Fetal Brain Male	brain
34	chr9:14241200-14243800	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:14241200-14243800	Weak transcription	NH-A	brain
36	chr9:14241200-14244600	Weak transcription	Liver	Liver
37	chr9:14241200-14244800	Weak transcription	Right Ventricle	heart
38	chr9:14241200-14244800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr9:14241200-14245000	Enhancers	Fetal Brain Female	brain
40	chr9:14241200-14245400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr9:14241200-14245600	Weak transcription	Left Ventricle	heart
42	chr9:14241200-14245600	Weak transcription	Ovary	ovary
43	chr9:14241200-14246200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr9:14241200-14246200	Weak transcription	Right Atrium	heart
45	chr9:14241200-14246400	Weak transcription	Brain Anterior Caudate	brain
46	chr9:14241200-14246400	Weak transcription	Gastric	stomach
47	chr9:14241200-14247000	Weak transcription	Fetal Stomach	stomach
48	chr9:14241200-14247200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr9:14241200-14247400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:14241200-14247400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links