Variant report

Variant	rs2181711
Chromosome Location	chr9:85830083-85830084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11139953	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11795061	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1323765	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1323766	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13292972	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13293114	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359165	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1830772	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7041473	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7041613	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864580	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85824200-85834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85827800-85833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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