Variant report

Variant	rs218204
Chromosome Location	chr2:33351036-33351037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33342989..33344574-chr2:33349726..33351939,2	K562	blood:
2	chr2:33341850..33346633-chr2:33347912..33351586,5	K562	blood:
3	chr2:33350370..33352702-chr2:33358225..33360528,2	K562	blood:

Variant related genes	Relation type
ENSG00000049323	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10189552	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1037507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1545551	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563183	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1563184	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563185	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs218188	0.88[AMR][1000 genomes]
rs218192	1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs218193	1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs218194	0.82[AMR][1000 genomes]
rs218195	0.87[TSI][hapmap]
rs218198	0.82[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218199	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218200	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218201	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218203	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218205	0.82[CEU][hapmap];1.00[GIH][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2198567	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4670254	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577712	0.82[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs897091	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1012946	chr2:33294522-33370391	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv535626	chr2:33294522-33370391	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv873789	chr2:33297967-33390188	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33333800-33355200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:33336600-33358400	Weak transcription	HUVEC	blood vessel
3	chr2:33336800-33352800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:33336800-33353400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:33336800-33358200	Weak transcription	Liver	Liver
6	chr2:33342200-33355000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:33344000-33357600	Weak transcription	Left Ventricle	heart
8	chr2:33346800-33358400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:33347400-33358000	Weak transcription	Ovary	ovary
10	chr2:33348600-33351400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:33348600-33351600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:33348600-33352600	Weak transcription	Fetal Heart	heart
13	chr2:33348600-33354800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:33348800-33352000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:33348800-33352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:33348800-33352200	Weak transcription	NH-A	brain
17	chr2:33348800-33352400	Weak transcription	HSMMtube	muscle
18	chr2:33348800-33356200	Weak transcription	HSMM	muscle
19	chr2:33349000-33351600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:33349000-33351800	Weak transcription	NHEK	skin
21	chr2:33349000-33352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:33349000-33352200	Weak transcription	HMEC	breast
23	chr2:33350400-33352400	Weak transcription	Aorta	Aorta
24	chr2:33351000-33351400	Enhancers	Fetal Muscle Leg	muscle
25	chr2:33351000-33352200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:33351000-33352400	Enhancers	Osteobl	bone
27	chr2:33351000-33353200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:33351000-33353600	Enhancers	NHDF-Ad	bronchial

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