Variant report

Variant	rs218227
Chromosome Location	chr2:33337640-33337641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33335855..33338715-chr2:33339721..33342037,2	K562	blood:
2	chr2:33333082..33335535-chr2:33335888..33338274,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1545551	1.00[AFR][1000 genomes]
rs218188	1.00[AFR][1000 genomes]
rs218191	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs218192	1.00[AFR][1000 genomes]
rs218196	1.00[AFR][1000 genomes]
rs219056	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs219057	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs219166	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012472	chr2:32657052-33338578	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1001408	chr2:33248877-33341137	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv535625	chr2:33248877-33341137	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1012946	chr2:33294522-33370391	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv535626	chr2:33294522-33370391	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv873789	chr2:33297967-33390188	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33328800-33347800	Weak transcription	Psoas Muscle	Psoas
2	chr2:33333400-33346600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:33333600-33342200	Weak transcription	Small Intestine	intestine
4	chr2:33333800-33339600	Weak transcription	Spleen	Spleen
5	chr2:33333800-33355200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:33334200-33342000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:33334400-33338200	Weak transcription	Placenta	Placenta
8	chr2:33334400-33338200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:33334400-33341800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:33334400-33342000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:33334400-33342000	Weak transcription	Left Ventricle	heart
12	chr2:33334600-33342000	Weak transcription	Aorta	Aorta
13	chr2:33336400-33343800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:33336600-33341200	Weak transcription	Fetal Lung	lung
15	chr2:33336600-33347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:33336600-33358400	Weak transcription	HUVEC	blood vessel
17	chr2:33336800-33338000	Enhancers	Fetal Heart	heart
18	chr2:33336800-33338000	Weak transcription	Right Atrium	heart
19	chr2:33336800-33338600	Weak transcription	A549	lung
20	chr2:33336800-33340200	Weak transcription	Osteobl	bone
21	chr2:33336800-33342000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:33336800-33343400	Weak transcription	K562	blood
23	chr2:33336800-33346400	Weak transcription	Ovary	ovary
24	chr2:33336800-33352800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:33336800-33353400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:33336800-33358200	Weak transcription	Liver	Liver
27	chr2:33337000-33340200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:33337000-33341800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:33337000-33342000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:33337600-33337800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links