Variant report

Variant	rs2185163
Chromosome Location	chr10:21992836-21992837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10430587	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1243180	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1243182	1.00[JPT][hapmap]
rs1243195	0.92[MEX][hapmap];0.94[AMR][1000 genomes]
rs2050905	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7079396	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21938600-21993800	Weak transcription	Lung	lung
2	chr10:21942600-22004000	Weak transcription	NH-A	brain
3	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:21961400-21993800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:21963000-21993600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
7	chr10:21977000-22002200	Weak transcription	Osteobl	bone
8	chr10:21981400-21994200	Weak transcription	Esophagus	oesophagus
9	chr10:21981800-21993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:21982200-22001600	Weak transcription	Placenta	Placenta
11	chr10:21983800-22002000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:21984200-21993800	Weak transcription	Pancreas	Pancrea
14	chr10:21984200-21994400	Weak transcription	Ovary	ovary
15	chr10:21984400-21993000	Weak transcription	Left Ventricle	heart
16	chr10:21984400-22002800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:21987200-21993800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:21987400-22004000	Weak transcription	Fetal Kidney	kidney
20	chr10:21987600-21994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:21987600-21996600	Weak transcription	HSMM	muscle
22	chr10:21987800-21999000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:21988000-21993600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:21988400-21999200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:21989400-22013000	Weak transcription	Fetal Brain Male	brain
26	chr10:21989600-21999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:21989600-22002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:21989800-21993600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:21989800-22002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:21989800-22002200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:21989800-22002600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:21989800-22002600	Weak transcription	NHDF-Ad	bronchial
33	chr10:21990000-21993800	Weak transcription	NHLF	lung
34	chr10:21990000-21994800	Weak transcription	A549	lung
35	chr10:21990000-21995200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:21990000-21995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:21990000-21999800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:21990200-21993600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:21990200-21993600	Weak transcription	Fetal Lung	lung
40	chr10:21990200-21994200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:21990200-21995200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:21990200-21995600	Weak transcription	Liver	Liver
43	chr10:21990200-21997200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:21990200-22004800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:21990200-22012800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:21990400-21993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:21990400-21993800	Weak transcription	Adipose Nuclei	Adipose
48	chr10:21990400-21994200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:21990400-22001400	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:21990600-21993400	Enhancers	Primary T cells fromperipheralblood	blood

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