Variant report

Variant	rs218645
Chromosome Location	chr21:37808548-37808549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37807939..37809702-chr21:37831962..37833487,2	MCF-7	breast:
2	chr21:37797952..37800219-chr21:37807926..37809678,2	MCF-7	breast:
3	chr21:37806735..37808811-chr21:37809787..37812155,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs218643	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs219793	0.85[EUR][1000 genomes]
rs2244034	0.90[EUR][1000 genomes]
rs2244237	0.82[EUR][1000 genomes]
rs2633331	0.90[EUR][1000 genomes]
rs2850082	0.90[EUR][1000 genomes]
rs2850086	0.86[EUR][1000 genomes]
rs2850101	0.82[EUR][1000 genomes]
rs2850109	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1064194	chr21:37782214-37819820	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37802400-37809800	Weak transcription	Pancreas	Pancrea
2	chr21:37802800-37810200	Weak transcription	Right Atrium	heart
3	chr21:37803400-37810000	Weak transcription	Psoas Muscle	Psoas
4	chr21:37803400-37810200	Weak transcription	Ovary	ovary
5	chr21:37803800-37809400	Weak transcription	Osteobl	bone
6	chr21:37803800-37809800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr21:37803800-37810200	Weak transcription	HSMM	muscle
8	chr21:37803800-37811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr21:37803800-37814200	Weak transcription	Gastric	stomach
10	chr21:37803800-37818600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr21:37804000-37809400	Weak transcription	NHLF	lung
12	chr21:37804000-37831600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr21:37804000-37831600	Weak transcription	HSMMtube	muscle
14	chr21:37804200-37809600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr21:37804400-37809200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr21:37804400-37809800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr21:37804400-37809800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr21:37805200-37808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr21:37805400-37809400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr21:37805600-37809400	Weak transcription	NHDF-Ad	bronchial
21	chr21:37806200-37811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr21:37807000-37809400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr21:37807200-37810200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr21:37807400-37809000	Weak transcription	HUVEC	blood vessel
25	chr21:37807400-37809400	Weak transcription	A549	lung
26	chr21:37807400-37809400	Weak transcription	NH-A	brain
27	chr21:37808000-37809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr21:37808000-37809400	Weak transcription	HMEC	breast
29	chr21:37808000-37809600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr21:37808000-37809600	Weak transcription	NHEK	skin
31	chr21:37808000-37811800	Weak transcription	Esophagus	oesophagus
32	chr21:37808200-37809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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