Variant report

Variant	rs218646
Chromosome Location	chr21:37774388-37774389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37760125..37762264-chr21:37772502..37776396,3	MCF-7	breast:
2	chr21:37771959..37774697-chr21:37780310..37782249,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224421	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs218634	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3337666	chr21:37772882-37775080	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37758400-37788000	Weak transcription	Colonic Mucosa	Colon
2	chr21:37758400-37792200	Weak transcription	Fetal Kidney	kidney
3	chr21:37758400-37793400	Weak transcription	Aorta	Aorta
4	chr21:37758400-37794600	Weak transcription	Left Ventricle	heart
5	chr21:37758400-37794800	Weak transcription	Right Ventricle	heart
6	chr21:37758600-37774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr21:37758600-37774600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr21:37758600-37774800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr21:37758600-37774800	Weak transcription	NHDF-Ad	bronchial
10	chr21:37758600-37775200	Weak transcription	Primary T cells from cord blood	blood
11	chr21:37758600-37777400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr21:37758600-37777600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr21:37758600-37780400	Weak transcription	HUVEC	blood vessel
14	chr21:37758600-37783600	Weak transcription	Brain Germinal Matrix	brain
15	chr21:37758600-37783800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr21:37758600-37783800	Weak transcription	Spleen	Spleen
17	chr21:37758600-37785000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr21:37758600-37785000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr21:37758600-37785600	Weak transcription	Adipose Nuclei	Adipose
20	chr21:37758600-37787400	Weak transcription	Primary B cells from cord blood	blood
21	chr21:37758600-37790600	Weak transcription	Brain Anterior Caudate	brain
22	chr21:37758600-37790800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr21:37758600-37791000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr21:37758600-37793400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr21:37758600-37794200	Weak transcription	Liver	Liver
26	chr21:37758600-37797600	Weak transcription	HSMM	muscle
27	chr21:37758800-37774600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr21:37758800-37774600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr21:37758800-37775000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr21:37758800-37775000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr21:37758800-37780400	Weak transcription	Fetal Lung	lung
32	chr21:37758800-37785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr21:37758800-37785200	Weak transcription	Pancreas	Pancrea
34	chr21:37758800-37785400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr21:37758800-37795000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr21:37759000-37774400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr21:37759000-37780400	Weak transcription	Hela-S3	cervix
38	chr21:37761200-37775800	Weak transcription	HSMMtube	muscle
39	chr21:37761400-37774600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr21:37761400-37775600	Weak transcription	Brain Substantia Nigra	brain
41	chr21:37761600-37774400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr21:37761600-37775800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr21:37761600-37775800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr21:37761600-37779200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr21:37761600-37790600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr21:37761600-37792200	Weak transcription	Brain Angular Gyrus	brain
47	chr21:37761600-37792400	Weak transcription	Brain Hippocampus Middle	brain
48	chr21:37762600-37776400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr21:37762800-37790200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr21:37763000-37785000	Weak transcription	Primary hematopoietic stem cells	blood

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