Variant report

Variant	rs2188533
Chromosome Location	chr7:112054466-112054467
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4730522	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112046000-112060400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:112051200-112054800	Weak transcription	Fetal Lung	lung
3	chr7:112051400-112055400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:112051600-112055200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:112051600-112055200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:112051600-112062000	Weak transcription	Right Atrium	heart
7	chr7:112051800-112059800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:112051800-112060400	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:112051800-112060400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:112052000-112055000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:112052000-112056200	Weak transcription	HUVEC	blood vessel
12	chr7:112052800-112059800	Weak transcription	HepG2	liver
13	chr7:112053800-112062000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:112054000-112055400	Weak transcription	Fetal Thymus	thymus
15	chr7:112054000-112059800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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