Variant report

Variant	rs2188620
Chromosome Location	chr16:31762196-31762197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1045483	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1073513	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1104549	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1104550	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11150632	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11150639	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11642525	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11643629	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12325485	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12386038	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12921028	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12932938	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1304163	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358485	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1406178	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1468158	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1468159	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528317	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1534506	0.80[EUR][1000 genomes]
rs1599855	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1609289	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1852667	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1881317	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1881318	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1919039	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2008774	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2078923	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2091521	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2097683	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2106580	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141349	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157969	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2214139	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2359220	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2359223	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359228	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2359231	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3088127	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34632985	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3751738	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3751742	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3937426	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4297693	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4499253	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4572414	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4632148	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4889679	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4889680	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4889687	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6565266	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6565270	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6565271	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6565277	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6565284	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7187074	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7188748	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7192274	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7192670	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7195700	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7197470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7197963	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7198038	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7359491	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7498390	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8043927	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8048027	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8048741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8052434	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8054649	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929209	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9928595	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9929259	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9939255	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
2	esv3344221	chr16:31526786-31821640	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	esv3323903	chr16:31526802-31821640	Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv3504445	chr16:31526873-31821580	Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	esv3504446	chr16:31526873-31821580	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	esv3366795	chr16:31534951-31827424	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv833195	chr16:31576112-31763222	ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv905761	chr16:31730525-31812442	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3446880	chr16:31734687-31891223	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31755400-31771000	ZNF genes & repeats	Liver	Liver
2	chr16:31756400-31771000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:31759600-31762200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:31759600-31762400	ZNF genes & repeats	Left Ventricle	heart
5	chr16:31759600-31767400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
6	chr16:31759600-31769200	ZNF genes & repeats	Colon Smooth Muscle	Colon
7	chr16:31759600-31769400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr16:31759600-31769600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr16:31759600-31769600	ZNF genes & repeats	HepG2	liver
10	chr16:31759600-31769800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr16:31759600-31770000	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr16:31759600-31770000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
13	chr16:31759600-31770200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr16:31759600-31770800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:31759600-31771000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr16:31759600-31771000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr16:31759600-31771000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr16:31759600-31771000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr16:31759600-31771000	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr16:31759600-31771000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr16:31759800-31762200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:31759800-31762400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr16:31759800-31767200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
24	chr16:31759800-31769200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr16:31759800-31769400	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr16:31759800-31769400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr16:31759800-31769600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr16:31759800-31769600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
29	chr16:31759800-31769600	ZNF genes & repeats	Brain Hippocampus Middle	brain
30	chr16:31759800-31770000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr16:31759800-31770000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr16:31759800-31770800	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr16:31759800-31771000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr16:31759800-31771000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:31759800-31772600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr16:31759800-31788600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr16:31760000-31762400	ZNF genes & repeats	Lung	lung
38	chr16:31760000-31769600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr16:31760000-31769600	ZNF genes & repeats	Brain Substantia Nigra	brain
40	chr16:31760200-31771000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr16:31761000-31764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:31761200-31763400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr16:31761200-31763800	Weak transcription	Thymus	Thymus
44	chr16:31761200-31764000	Weak transcription	Pancreas	Pancrea
45	chr16:31761200-31768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr16:31761200-31768600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr16:31761600-31763000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr16:31762000-31763200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:31762000-31763600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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