Variant report

Variant	rs2189229
Chromosome Location	chr4:106493969-106493970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10019722	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199314	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199318	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199319	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199322	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199323	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199324	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199328	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs199329	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2866792	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2866794	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2903392	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1005011	chr4:106461690-106496019	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1013019	chr4:106461690-106501412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv517837	chr4:106466588-106502513	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106488200-106495400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106490800-106502000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:106490800-106506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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