Variant report

Variant	rs2189585
Chromosome Location	chr7:79544063-79544064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10486914	1.00[AMR][1000 genomes]
rs17152939	1.00[AMR][1000 genomes]
rs17153084	1.00[AMR][1000 genomes]
rs17153223	1.00[AMR][1000 genomes]
rs17153266	1.00[AMR][1000 genomes]
rs17153277	1.00[AMR][1000 genomes]
rs17153317	1.00[AMR][1000 genomes]
rs17153332	1.00[AMR][1000 genomes]
rs17153345	1.00[AMR][1000 genomes]
rs17153405	1.00[AMR][1000 genomes]
rs7804760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79540800-79544400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr7:79542800-79544400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr7:79542800-79544400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:79542800-79544600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:79543400-79544200	Weak transcription	Dnd41	blood
6	chr7:79543400-79544400	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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