Variant report

Variant	rs2190750
Chromosome Location	chr15:92671256-92671257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3815318	0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808135	chr15:92669184-92675972	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	esv1808750	chr15:92669184-92676546	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	esv1804399	chr15:92669184-92677517	Weak transcription Genic enhancers Strong transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	esv1813736	chr15:92669468-92676435	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92648200-92692600	Weak transcription	NHLF	lung
5	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
6	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
9	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
10	chr15:92662200-92673400	Weak transcription	HMEC	breast
11	chr15:92662200-92673800	Weak transcription	NHEK	skin
12	chr15:92663000-92677200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:92663400-92672800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:92663400-92677600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:92663400-92679200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:92663400-92679400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:92663600-92676200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:92664000-92707000	Weak transcription	Liver	Liver
19	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
20	chr15:92664400-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:92664600-92673400	Weak transcription	Fetal Lung	lung
22	chr15:92664600-92675400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:92665200-92689000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:92665800-92672800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:92665800-92673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:92665800-92673400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:92665800-92676600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:92665800-92682400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:92665800-92686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:92666000-92672000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:92666000-92685600	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:92666400-92671800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:92666800-92674000	Strong transcription	Esophagus	oesophagus
35	chr15:92667000-92674400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:92667000-92675400	Strong transcription	Aorta	Aorta
37	chr15:92667200-92679200	Strong transcription	Lung	lung
38	chr15:92667400-92672800	Strong transcription	Primary T cells from cord blood	blood
39	chr15:92667400-92673400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:92667400-92675400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:92667800-92673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:92667800-92673400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:92667800-92673600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:92668000-92672400	Strong transcription	Fetal Stomach	stomach
45	chr15:92668000-92673200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:92668000-92673200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:92668000-92673400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:92668200-92673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:92668200-92673400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:92668200-92673400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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