Variant report

Variant	rs2191277
Chromosome Location	chr7:123794037-123794038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10281847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121030	0.82[EUR][1000 genomes]
rs1541475	0.84[JPT][hapmap]
rs4731155	0.85[AMR][1000 genomes]
rs6466897	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723882	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799270	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608338	chr7:123787673-124063498	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2191277	LMOD2	cis	cerebellum	SCAN
rs2191277	RNF148	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:123792000-123794600	Enhancers	HUVEC	blood vessel
2	chr7:123792600-123794400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:123793000-123794200	Enhancers	NHEK	skin
4	chr7:123793400-123794200	Enhancers	Duodenum Mucosa	Duodenum
5	chr7:123793800-123794600	Enhancers	Fetal Intestine Small	intestine
6	chr7:123794000-123795400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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