Variant report
Variant | rs219249 |
---|---|
Chromosome Location | chr7:150991795-150991796 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:150939223..150941619-chr7:150989727..150991845,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000082014 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs219240 | 0.92[CHB][hapmap] |
rs219245 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
rs219246 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
rs219247 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs219248 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs219263 | 0.82[ASN][1000 genomes] |
rs219264 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs219265 | 0.80[ASN][1000 genomes] |
rs219267 | 0.82[ASN][1000 genomes] |
rs219268 | 0.82[ASN][1000 genomes] |
rs219269 | 0.82[ASN][1000 genomes] |
rs219270 | 0.82[ASN][1000 genomes] |
rs219271 | 0.82[ASN][1000 genomes] |
rs219272 | 0.82[ASN][1000 genomes] |
rs219273 | 0.82[ASN][1000 genomes] |
rs2429246 | 0.80[ASN][1000 genomes] |
rs2429247 | 0.80[ASN][1000 genomes] |
rs3789818 | 0.84[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv465216 | chr7:150951819-150991795 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
2 | nsv609036 | chr7:150951819-150991795 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1023436 | chr7:150967147-150997692 | Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
4 | nsv1022782 | chr7:150970748-150992935 | Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |