Variant report

Variant	rs2192882
Chromosome Location	chr7:78094285-78094286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11972334	0.87[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17367928	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes]
rs7803705	0.93[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522955	chr7:78092725-78095872	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78093200-78095200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:78093400-78095200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:78093400-78099200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78093600-78094600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:78093600-78094800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:78093600-78095200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78093800-78095000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:78093800-78095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:78093800-78095200	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:78093800-78096000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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