The 2.0 version of rSNPBase

Variant report

Variant rs2193454
Chromosome Location chr2:172178940-172178941
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172163800-172181400 Weak transcription Gastric stomach
2 chr2:172165600-172179400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr2:172169200-172182400 Weak transcription Aorta Aorta
4 chr2:172169200-172193400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr2:172169400-172179400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr2:172169600-172179400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr2:172169800-172181200 Weak transcription Muscle Satellite Cultured Cells --
8 chr2:172169800-172183200 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr2:172170200-172192800 Weak transcription Fetal Intestine Large intestine
10 chr2:172171400-172190800 Weak transcription Esophagus oesophagus
11 chr2:172171800-172211600 Weak transcription Fetal Intestine Small intestine
12 chr2:172172600-172179800 Weak transcription Fetal Thymus thymus
13 chr2:172172600-172190600 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr2:172172800-172190600 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr2:172172800-172222400 Weak transcription Fetal Muscle Trunk muscle
16 chr2:172173000-172182200 Weak transcription Liver Liver
17 chr2:172173600-172186000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr2:172173800-172180200 Enhancers Primary B cells from cord blood blood
19 chr2:172174400-172179400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr2:172174400-172180200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr2:172174600-172180000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr2:172175200-172181800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr2:172175400-172183000 Weak transcription Fetal Lung lung
24 chr2:172175400-172187600 Weak transcription Fetal Muscle Leg muscle
25 chr2:172175600-172179600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr2:172175600-172180200 Strong transcription HepG2 liver
27 chr2:172175600-172188000 Weak transcription Adipose Nuclei Adipose
28 chr2:172175800-172183600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr2:172176000-172183400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr2:172176000-172184400 Weak transcription NHDF-Ad bronchial
31 chr2:172176000-172187800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr2:172176200-172180000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr2:172176200-172180200 Enhancers Primary B cells from peripheral blood blood
34 chr2:172176200-172180400 Weak transcription Primary T cells from cord blood blood
35 chr2:172176200-172180400 Weak transcription K562 blood
36 chr2:172176200-172180600 Weak transcription Duodenum Mucosa Duodenum
37 chr2:172176200-172181200 Weak transcription Primary T cells fromperipheralblood blood
38 chr2:172176200-172181800 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr2:172176200-172182400 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr2:172176200-172183200 Weak transcription Fetal Stomach stomach
41 chr2:172176200-172183600 Weak transcription Stomach Smooth Muscle stomach
42 chr2:172176200-172183800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr2:172176200-172198600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr2:172176400-172183000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr2:172176400-172183400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr2:172176600-172182000 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr2:172176800-172181200 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr2:172177000-172182000 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr2:172177000-172183400 Weak transcription Brain Hippocampus Middle brain
50 chr2:172177200-172183200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015