Variant report

Variant	rs2194466
Chromosome Location	chr2:31321915-31321916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10178131	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10193546	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386542	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13392394	0.81[EUR][1000 genomes]
rs13404171	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13407335	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17010651	0.96[EUR][1000 genomes]
rs2216830	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6705710	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6714508	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718847	0.89[EUR][1000 genomes]
rs6736355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921454	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9973423	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31302600-31325200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:31307400-31331600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:31310600-31346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:31320600-31337800	Weak transcription	Primary B cells from cord blood	blood
5	chr2:31321000-31330800	Weak transcription	Psoas Muscle	Psoas
6	chr2:31321400-31332000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:31321600-31330400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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