Variant report

Variant	rs2195557
Chromosome Location	chr15:34056332-34056333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10163114	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072644	0.87[CHB][hapmap]
rs11072651	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11638623	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591565	0.86[EUR][1000 genomes]
rs12591583	0.86[EUR][1000 genomes]
rs2115749	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2195556	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525460	0.84[EUR][1000 genomes]
rs4620925	0.86[EUR][1000 genomes]
rs4780178	0.81[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57153050	0.86[EUR][1000 genomes]
rs59965365	0.85[EUR][1000 genomes]
rs62012647	0.85[EUR][1000 genomes]
rs62012648	0.86[EUR][1000 genomes]
rs7164080	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs7164098	0.82[EUR][1000 genomes]
rs7165052	0.90[JPT][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs7165295	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs8032500	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8035184	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8036744	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042401	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042647	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34049200-34057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:34050400-34074200	Weak transcription	Brain Substantia Nigra	brain
3	chr15:34050800-34063800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:34050800-34072400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
6	chr15:34051000-34072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:34051200-34061200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:34051200-34063800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:34051200-34077400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:34051600-34072600	Weak transcription	Fetal Muscle Trunk	muscle

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