Variant report

Variant	rs219562
Chromosome Location	chr2:21580112-21580113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10865318	0.83[EUR][1000 genomes]
rs12713441	0.83[EUR][1000 genomes]
rs432705	0.90[ASN][1000 genomes]
rs6730605	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs892459	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv455863	chr2:21547003-21615340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv581170	chr2:21547003-21615340	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs219562	FKBP1B	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21577800-21581200	Weak transcription	Aorta	Aorta
2	chr2:21579200-21580200	Enhancers	NHEK	skin
3	chr2:21579400-21580200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:21579400-21580800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:21579600-21580600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:21579800-21580200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:21580000-21580200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:21580000-21581600	Weak transcription	Fetal Lung	lung
9	chr2:21580000-21581800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:21580000-21583400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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