Variant report

Variant	rs2196679
Chromosome Location	chr7:38531418-38531419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1014570	0.93[LWK][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs1014572	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs1019290	0.93[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs1030018	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs10951557	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs12535314	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs16879852	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs17171372	0.93[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs17171374	0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs17171383	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043785	0.87[ASW][hapmap];0.81[LWK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs2284255	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs3807417	0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807418	1.00[ASN][1000 genomes]
rs3807420	0.93[LWK][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs3807421	0.88[AFR][1000 genomes]
rs3807422	0.88[AFR][1000 genomes]
rs4723759	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs4723760	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs6462845	1.00[ASN][1000 genomes]
rs6462846	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462847	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950276	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs6969360	0.85[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6970073	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972241	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722335	0.93[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs722336	0.87[LWK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs73120296	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777361	0.85[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791817	0.82[CEU][hapmap]
rs7808755	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809200	0.85[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811329	1.00[ASW][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
3	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:38524200-38545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:38528600-38553000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:38530600-38532200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:38531400-38544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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