Variant report

Variant	rs2197193
Chromosome Location	chr11:27105798-27105799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10501076	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501079	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821389	1.00[ASN][1000 genomes]
rs12099199	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099200	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372903	1.00[ASN][1000 genomes]
rs1442918	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470270	1.00[ASN][1000 genomes]
rs16916613	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916618	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916620	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916630	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916633	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916634	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243943	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243951	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17309642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17309677	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17309691	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899507	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899508	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002082	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002083	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015158	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015372	1.00[ASN][1000 genomes]
rs2197189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304912	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304913	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3183973	1.00[ASN][1000 genomes]
rs3802783	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4409779	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426092	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450135	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603260	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620678	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635960	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56932826	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57495929	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58106325	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58124167	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58156212	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58308268	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59045289	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59643797	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59753371	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59945650	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60376193	1.00[ASN][1000 genomes]
rs60428745	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551343	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61106295	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61116911	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727838	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73434077	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434081	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434083	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435913	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943507	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972904	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1040964	chr11:26998213-27223388	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv540975	chr11:26998213-27223388	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv949575	chr11:27005687-27233359	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv533052	chr11:27006061-27225374	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv553912	chr11:27014032-27240951	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv467781	chr11:27019331-27240951	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv553913	chr11:27019331-27240951	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv508619	chr11:27028494-27110734	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:27098400-27107600	Weak transcription	Aorta	Aorta
2	chr11:27102800-27106800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:27103800-27106600	Enhancers	Fetal Heart	heart
4	chr11:27104000-27107400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:27104200-27107200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:27104800-27107200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:27104800-27107600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:27104800-27108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:27104800-27108200	Enhancers	Fetal Lung	lung
10	chr11:27105000-27105800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:27105000-27107600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:27105000-27107600	Enhancers	Liver	Liver
13	chr11:27105400-27105800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:27105400-27105800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:27105400-27105800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:27105400-27105800	Enhancers	Right Atrium	heart
17	chr11:27105400-27106200	Enhancers	Brain Anterior Caudate	brain
18	chr11:27105400-27106400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:27105400-27107000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:27105400-27107600	Enhancers	Colon Smooth Muscle	Colon
21	chr11:27105400-27107600	Enhancers	HMEC	breast
22	chr11:27105600-27106400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:27105600-27106600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:27105600-27107200	Enhancers	Rectal Smooth Muscle	rectum
25	chr11:27105600-27107400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:27105600-27107600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:27105600-27107600	Enhancers	Fetal Kidney	kidney
28	chr11:27105600-27107600	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links