Variant report

Variant	rs219766
Chromosome Location	chr21:37836477-37836478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37835819..37837846-chr21:37849702..37852349,2	MCF-7	breast:
2	chr21:37830343..37833071-chr21:37835621..37838183,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs219767	0.85[EUR][1000 genomes]
rs219774	0.84[EUR][1000 genomes]
rs219777	0.84[EUR][1000 genomes]
rs219783	0.81[EUR][1000 genomes]
rs219784	0.82[EUR][1000 genomes]
rs219790	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv33286	chr21:37827016-37861556	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv587470	chr21:37834641-37872447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37824800-37836800	Weak transcription	Right Atrium	heart
2	chr21:37827200-37837200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:37827400-37836800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr21:37832800-37837000	Weak transcription	HSMMtube	muscle
5	chr21:37832800-37837200	Weak transcription	NH-A	brain
6	chr21:37833000-37837400	Weak transcription	Osteobl	bone
7	chr21:37833800-37838400	Enhancers	Liver	Liver
8	chr21:37834200-37836800	Weak transcription	Esophagus	oesophagus
9	chr21:37834200-37838000	Weak transcription	Gastric	stomach
10	chr21:37834400-37837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr21:37834400-37842600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr21:37834600-37836800	Weak transcription	A549	lung
13	chr21:37834600-37837000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr21:37834600-37837000	Weak transcription	Fetal Kidney	kidney
15	chr21:37834800-37836800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr21:37834800-37836800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr21:37834800-37836800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr21:37834800-37836800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr21:37834800-37837200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr21:37834800-37838600	Weak transcription	Pancreas	Pancrea
21	chr21:37834800-37841600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr21:37834800-37842400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr21:37835000-37836800	Weak transcription	Fetal Heart	heart
24	chr21:37835000-37842000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr21:37835200-37836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr21:37835800-37836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr21:37836200-37836600	Enhancers	Stomach Mucosa	stomach
28	chr21:37836200-37836800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr21:37836200-37839600	Enhancers	HUVEC	blood vessel
30	chr21:37836400-37837400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr21:37836400-37837600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr21:37836400-37838400	Enhancers	Skeletal Muscle Female	skeletal muscle

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