Variant report

Variant	rs219773
Chromosome Location	chr21:37835333-37835334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37834091..37836230-chr21:37837341..37839598,2	MCF-7	breast:
2	chr21:37834815..37836353-chr21:37844064..37847059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159261	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16994103	1.00[ASN][1000 genomes]
rs2101437	1.00[ASN][1000 genomes]
rs219767	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219768	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219769	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219770	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219771	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219772	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219774	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219775	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219777	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219779	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219780	0.81[CEU][hapmap]
rs219781	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219782	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219783	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219784	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219787	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219790	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs219791	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2835343	1.00[ASN][1000 genomes]
rs2835363	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692359	1.00[ASN][1000 genomes]
rs55801805	1.00[ASN][1000 genomes]
rs73902527	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv33286	chr21:37827016-37861556	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv587470	chr21:37834641-37872447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37824800-37836800	Weak transcription	Right Atrium	heart
2	chr21:37827200-37837200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:37827400-37836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr21:37827400-37836800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr21:37832200-37836200	Weak transcription	HUVEC	blood vessel
6	chr21:37832800-37837000	Weak transcription	HSMMtube	muscle
7	chr21:37832800-37837200	Weak transcription	NH-A	brain
8	chr21:37833000-37837400	Weak transcription	Osteobl	bone
9	chr21:37833200-37835800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr21:37833800-37838400	Enhancers	Liver	Liver
11	chr21:37834200-37836800	Weak transcription	Esophagus	oesophagus
12	chr21:37834200-37838000	Weak transcription	Gastric	stomach
13	chr21:37834400-37837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr21:37834400-37842600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr21:37834600-37836400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr21:37834600-37836800	Weak transcription	A549	lung
17	chr21:37834600-37837000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr21:37834600-37837000	Weak transcription	Fetal Kidney	kidney
19	chr21:37834800-37836400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr21:37834800-37836800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr21:37834800-37836800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr21:37834800-37836800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr21:37834800-37836800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr21:37834800-37837200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr21:37834800-37838600	Weak transcription	Pancreas	Pancrea
26	chr21:37834800-37841600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr21:37834800-37842400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr21:37835000-37836800	Weak transcription	Fetal Heart	heart
29	chr21:37835000-37842000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr21:37835200-37836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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