The 2.0 version of rSNPBase

Variant report

Variant rs2198804
Chromosome Location chr15:52023443-52023444
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52000800-52024000 Weak transcription Gastric stomach
2 chr15:52012400-52024200 Weak transcription Fetal Lung lung
3 chr15:52013400-52023600 Weak transcription Colonic Mucosa Colon
4 chr15:52013600-52028200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr15:52013600-52028400 Weak transcription Fetal Brain Female brain
6 chr15:52013600-52028800 Weak transcription Fetal Muscle Trunk muscle
7 chr15:52017400-52023600 Weak transcription Placenta Placenta
8 chr15:52019000-52023600 Weak transcription Fetal Muscle Leg muscle
9 chr15:52019000-52023800 Weak transcription Brain Angular Gyrus brain
10 chr15:52019000-52028200 Weak transcription Brain Substantia Nigra brain
11 chr15:52019200-52023600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr15:52019400-52023600 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr15:52019400-52023800 Weak transcription Brain Hippocampus Middle brain
14 chr15:52019600-52024000 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr15:52019800-52023600 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr15:52019800-52023600 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr15:52019800-52023800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr15:52019800-52023800 Weak transcription Aorta Aorta
19 chr15:52020000-52023600 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr15:52020000-52023600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr15:52020000-52023600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr15:52020000-52023600 Weak transcription Pancreas Pancrea
23 chr15:52020000-52023600 Weak transcription Psoas Muscle Psoas
24 chr15:52020000-52023600 Weak transcription Hela-S3 cervix
25 chr15:52020000-52023600 Weak transcription HSMM muscle
26 chr15:52020000-52024000 Weak transcription Esophagus oesophagus
27 chr15:52020000-52024000 Weak transcription Right Ventricle heart
28 chr15:52020000-52024200 Weak transcription Left Ventricle heart
29 chr15:52020000-52028800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr15:52020200-52023600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr15:52020200-52023600 Weak transcription Right Atrium heart
32 chr15:52020200-52024000 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr15:52020200-52024200 Weak transcription Ovary ovary
34 chr15:52020200-52024400 Weak transcription Spleen Spleen
35 chr15:52020200-52028000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr15:52020200-52029000 Weak transcription NH-A brain
37 chr15:52020400-52028000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr15:52020600-52023600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr15:52020600-52024200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr15:52021600-52023600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr15:52022000-52023600 Genic enhancers Primary B cells from peripheral blood blood
42 chr15:52022400-52023600 Enhancers Primary monocytes fromperipheralblood blood
43 chr15:52022400-52023800 Enhancers K562 blood
44 chr15:52022400-52026000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr15:52022600-52023600 Enhancers Fetal Thymus thymus
46 chr15:52022600-52024200 Weak transcription Lung lung
47 chr15:52022600-52025400 Enhancers Small Intestine intestine
48 chr15:52023000-52023600 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
49 chr15:52023000-52023600 Enhancers Primary mononuclear cells fromperipheralblood Blood
50 chr15:52023000-52023600 Enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015