Variant report

Variant	rs2198964
Chromosome Location	chr12:10798411-10798412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11053888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053890	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053891	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11836109	0.90[AMR][1000 genomes]
rs11836264	0.90[AMR][1000 genomes]
rs12297620	0.81[AFR][1000 genomes]
rs12299672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302213	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304304	0.81[AFR][1000 genomes]
rs12304656	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12311784	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12315090	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319401	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321785	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12322680	0.81[AFR][1000 genomes]
rs55785135	0.90[AMR][1000 genomes]
rs56801111	0.81[AMR][1000 genomes]
rs57025730	0.81[AMR][1000 genomes]
rs57035205	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58067632	0.81[AMR][1000 genomes]
rs58677311	0.90[AMR][1000 genomes]
rs59613394	0.90[AMR][1000 genomes]
rs60400937	0.81[AMR][1000 genomes]
rs60461379	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61473048	0.90[AMR][1000 genomes]
rs73252005	0.81[AMR][1000 genomes]
rs73254038	0.81[AMR][1000 genomes]
rs74060455	0.90[AMR][1000 genomes]
rs74060471	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs74060473	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7968001	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv607	chr12:10776867-10821535	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10790600-10799200	Weak transcription	Esophagus	oesophagus
2	chr12:10797400-10800400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr12:10797800-10799000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:10798000-10799800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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